Papers - Kanai, Akio
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A screening system for artificial small RNAs that inhibit the growth of Escherichia coli
Mizuki Komasa, Kosuke Fujishima, Kiriko Hiraoka, Atsuko Shinhara, Baek-Seok Lee, Masaru Tomita and Akio Kanai
The Journal of Biochemistry 150 ( 3 ) 289-294 2011.09
Research paper (scientific journal), Joint Work, Accepted
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Vertebrate-virus-encoded microRNAs and their sequence conservation
Takane, K. and Kanai, A.
Japanese Journal of Infectious Diseases 64 ( 5 ) 357-366 2011.09
Research paper (scientific journal), Joint Work, Accepted
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Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli.
Shinhara, A., Matsui, M., Hiraoka, K., Nomura, W., Hirano, R., Nakahigashi, K., Tomita, M., Mori, H. and Kanai, A.
BMC Genomics (BioMed Central) 12 428 2011.08
Research paper (scientific journal), Joint Work, Last author, Corresponding author, Accepted
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Systems biology reveals microRNA-mediated gene regulation
Watanabe, Y. and Kanai, A.
Frontiers in Genetics 2 29 2011.06
Research paper (scientific journal), Joint Work, Accepted
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tRNADB-CE 2011: tRNA gene database curated manually by experts.
Abe, T., Ikemura, T., Sugahara, J., Kanai, A., Ohara, Y., Uehara, H., Kinouchi, M., Kanaya, S., Yamada, Y., Muto, A. and Inokuchi, H.
Nucleic Acids Research 39 D210-D213 2011
Research paper (scientific journal), Joint Work, Accepted
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Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group
Takuro Nunoura, Yoshihiro Takaki, Jungo Kakuta, Shinro Nishi, Junichi Sugahara, Hiromi Kazama, Gab-Joo Chee, Masahira Hattori, Akio Kanai, Haruyuki Atomi, Ken Takai and Hideto Takami
Nucleic Acids Research 39 ( 8 ) 3204-3223 2011
Research paper (scientific journal), Joint Work, Accepted
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Comprehensive expressional analyses of antisense transcripts in colon cancer tissues using artificial antisense probes
Rintaro Saito, Keisuke Kohno, Yuki Okada, Yuko Osada, Koji Numata, Chihiro Kohama, Kazufumi Watanabe, Hajime Nakaoka, Naoyuki Yamamoto, Akio Kanai, Hiroshi Yasue, Soichiro Murata, Kuniya Abe, Masaru Tomita, Nobuhiro Ohkohchi, Hidenori Kiyosawa
BMC Medical Genomics 4 42 2011
Research paper (scientific journal), Joint Work
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Fujishima, K., Sugahara, J., Tomita, M. and Kanai, A.
Molecular Biology and Evolution (Oxford Academic) 27 ( 10 ) 2233 - 2243 2010.10
Research paper (scientific journal), Joint Work, Last author, Corresponding author, Accepted
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Transcription-associated mutagenesis increase protein sequence diversity more effectively than does random mutagenesis in Escherichia coli
Kim, H., Lee, B.-S., Tomita, M. and Kanai, A.
PLoS ONE 5 ( 5 ) e10567 2010.05
Research paper (scientific journal), Joint Work, Accepted
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Permuted tRNA genes in the nuclear and nucleomorph genomes of photosynthetic eukaryotes.
Maruyama, S., Sugahara, J., Kanai, A. and Nozaki, H.
Molecular Biology and Evolution 27 ( 5 ) 1070-1076 2010.05
Research paper (scientific journal), Joint Work, Accepted
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Computational prediction and experimental validation of evolutionarily conserved microRNA target genes in bilaterian animals
Takane, K., Fujishima, K., Watanabe, Y., Sato, A., Saito, N., Tomita, M. and Kanai, A.
BMC Genomics 11 ( 101 ) 2010.02
Research paper (scientific journal), Joint Work, Accepted
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Characterization of RNase HII substrate recognition using RNase HII-Argonaute chimeric enzymes from Pyrococcus furiosus
Sayaka Kitamura, Kosuke Fujishima, Asako Sato, Daisuke Tsuchiya, Masaru Tomita and Akio Kanai
Biochemical Journal 426 ( 3 ) 337-344 2010.01
Research paper (scientific journal), Joint Work, Accepted
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Disrupted tRNA gene diversity and possible evolutionary scenarios
Sugahara, J., Fujishima, K., Morita, K., Tomita, M. and Kanai, A.
Journal of Molecular Evolution 69 ( 5 ) 497-504 2009.10
Research paper (scientific journal), Joint Work, Accepted
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Identification of novel endogenous antisense transcripts by DNA microarray analysis targeting complementary strand of annotated genes
Numata, K., Osada, Y., Okada, Y., Saito, R., Hiraiwa, N., Nakaoka, H., Yamamoto, N., Watanabe, K., Okubo, K., Kohama, C., Kanai, A., Abe, K. and Kiyosawa, H.
BMC Genomics 10 392 2009.08
Research paper (scientific journal), Joint Work, Accepted
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Comprehensive analysis of archaeal tRNA genes reveals rapid increase of tRNA introns in the order Thermoproteales
Sugahara, J., Kikuta, K., Fujishima, K., Yachie, N., Tomita, M. and Kanai, A.
Molecular Biology and Evolution 25 ( 12 ) 2709-2716 2008.10
Research paper (scientific journal), Joint Work, Last author, Corresponding author, Accepted
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Sequence evidence in the archaeal genome that tRNAs emerged through the combination of ancestral genes as 5’ and 3’ tRNA halves
Fujishima, K., Sugahara, J., Tomita, M. and Kanai, A.
PLoS ONE 3 ( 2 ) e1622 2008.02
Research paper (scientific journal), Joint Work, Accepted
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Comparative expression analysis uncovers novel features of endogenous antisense transcription
Okada Y, Tashiro C, Numata K, Watanabe K, Nakaoka H, Yamamoto N, Okubo K, Ikeda R, Saito R, Kanai A, Abe K, Tomita M, Kiyosawa H.
Human Molecular Genetics 17 ( 11 ) 1631-1640 2008.02
Research paper (scientific journal), Joint Work, Accepted
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Perspective in the evolution of human microRNAs: copy number expansion and acquisition of target gene specialization
Watanabe, Y., Tomita, M. and Kanai, A
Progress of Theoretical Physics Supplement 173 219-228 2008
Research paper (scientific journal), Joint Work, Accepted
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Comparison and characterization of proteomes in the three domains of life using 2D correlation analysis
Fujishima, K., Komasa, M., Kitamura, S., Tomita, M. and Kanai, A
Progress of Theoretical Physics Supplement 173 206-218 2008
Research paper (scientific journal), Joint Work, Accepted
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A novel processing pathway via a circular RNA intermediate of permutated tRNA genes in Cyanidioschyzon merolae
Soma, A., Onodera, A., Sugahara, J., Kanai, A., Yachie, N., Tomita, M., Kawamura, F. and Sekine, Y.
Science 318 450-453 2007.10
Research paper (scientific journal), Joint Work, Accepted