Shimono, Masanori

写真a

Affiliation

School of Medicine, Department of Physiology (Shinanomachi)

Position

Instructor
Page Top ▲
 

Papers 【 Display / hide 】

  • Firing pattern manipulation of neuronal networks by deep unfolding-based model predictive control

    Aizawa J., Ogura M., Shimono M., Wakamiya N.

    Iet Control Theory and Applications 18 ( 15 ) 2003 - 2013 2024.10

    ISSN  17518644

    　View Summary

    The complexity of neuronal networks, characterized by interconnected neurons, presents significant challenges in control due to their nonlinear and intricate behaviour. This paper introduces a novel method designed to generate control inputs for neuronal networks to regulate the firing patterns of modules within the network. This methodology is built upon temporal deep unfolding-based model predictive control, a technique rooted in the deep unfolding method commonly used in wireless signal processing. To address the unique dynamics of neurons, such as zero gradients in firing times, the method employs approximations of input currents using a sigmoid function during its development. The effectiveness of this approach is validated through extensive numerical simulations. Furthermore, control experiments were conducted by reducing the number of input neurons to identify critical features for control. Various selection techniques were utilized to pinpoint key input neurons. These experiments shed light on the importance of specific input neurons in controlling module firing within neuronal networks. Thus, this study presents a tailored methodology for managing networked neurons, extends temporal deep unfolding-based model predictive control to nonlinear systems with reset dynamics, and demonstrates its ability to achieve desired firing patterns in neuronal networks.

  • Mutual generation in neuronal activity across the brain via deep neural approach, and its network interpretation

    Nakajima R., Shirakami A., Tsumura H., Matsuda K., Nakamura E., Shimono M.

    Communications Biology 6 ( 1 )  2023.12

    　View Summary

    In the brain, many regions work in a network-like association, yet it is not known how durable these associations are in terms of activity and could survive without structural connections. To assess the association or similarity between brain regions with a generating approach, this study evaluated the similarity of activities of neurons within each region after disconnecting between regions. The “generation” approach here refers to using a multi-layer LSTM (Long Short-Term Memory) model to learn the rules of activity generation in one region and then apply that knowledge to generate activity in other regions. Surprisingly, the results revealed that activity generation from one region to disconnected regions was possible with similar accuracy to generation between the same regions in many cases. Notably, firing rates and synchronization of firing between neuron pairs, often used as neuronal representations, could be reproduced with precision. Additionally, accuracies were associated with the relative angle between brain regions and the strength of the structural connections that initially connected them. This outcome enables us to look into trends governing non-uniformity of the cortex based on the potential to generate informative data and reduces the need for animal experiments.

  • Whole-Brain Evaluation of Cortical Microconnectomes

    Matsuda K., Shirakami A., Nakajima R., Akutsu T., Shimono M.

    Eneuro 10 ( 10 )  2023.10

    　View Summary

    The brain is an organ that functions as a network of many elements connected in a nonuniform manner. In the brain, the neocortex is evolutionarily newest and is thought to be primarily responsible for the high intelligence of mammals. In the mature mammalian brain, all cortical regions are expected to have some degree of homology, but have some variations of local circuits to achieve specific functions performed by individual regions. However, few cellular-level studies have examined how the networks within different cortical regions differ. This study aimed to find rules for systematic changes of connectivity (microconnectomes) across 16 different cortical region groups. We also observed unknown trends in basic parameters in vitro such as firing rate and layer thickness across brain regions. Results revealed that the frontal group shows unique characteristics such as dense active neurons, thick cortex, and strong connections with deeper layers. This suggests the frontal side of the cortex is inherently capable of driving, even in isolation and that frontal nodes provide the driving force generating a global pattern of spontaneous synchronous activity, such as the default mode network. This finding provides a new hypothesis explaining why disruption in the frontal region causes a large impact on mental health.

  • Manipulation of Neuronal Network Firing Patterns using Temporal Deep Unfolding-based MPC

    Aizawa J., Ogura M., Shimono M., Wakamiya N.

    2023 Asia Pacific Signal and Information Processing Association Annual Summit and Conference Apsipa ASC 2023    15 - 21 2023

    　View Summary

    Because neuronal networks are intricate systems composed of interconnected neurons, their control poses challenges owing to their nonlinearity and complexity. In this paper, we propose a method to design control input to a neuronal network to manipulate the firing patterns of modules within the network. We propose a methodology for designing a control input based on temporal deep unfolding-based model predictive control (TDU-MPC), a control methodology based on the deep unfolding technique actively investigated in the context of wireless signal processing. During the method development, we address the unique characteristics of neuron dynamics, such as zero gradients in firing times, by approximating input currents using a sigmoid function. The effectiveness of the proposed method is confirmed via numerical simulations. In networks with 15 and 30 neurons, the control was achieved to switch the firing frequencies of two modules without directly applying control inputs. This study includes a tailored methodology for networked neurons, the extension of TDU-MPC to nonlinear systems with reset dynamics, and the achievement of desired firing patterns in neuronal networks.

  • Inhibitory neurons exhibit high controlling ability in the cortical microconnectome

    Kajiwara M., Nomura R., Goetze F., Kawabata M., Isomura Y., Akutsu T., Shimono M.

    Plos Computational Biology 17 ( 4 )  2021.04

    ISSN  1553734X

    　View Summary

    The brain is a network system in which excitatory and inhibitory neurons keep activity balanced in the highly non-random connectivity pattern of the microconnectome. It is well known that the relative percentage of inhibitory neurons is much smaller than excitatory neurons in the cortex. So, in general, how inhibitory neurons can keep the balance with the surrounding excitatory neurons is an important question. There is much accumulated knowledge about this fundamental question. This study quantitatively evaluated the relatively higher functional contribution of inhibitory neurons in terms of not only properties of individual neurons, such as firing rate, but also in terms of topological mechanisms and controlling ability on other excitatory neurons. We combined simultaneous electrical recording (~2.5 hours) of ~1000 neurons in vitro, and quantitative evaluation of neuronal interactions including excitatory-inhibitory categorization. This study accurately defined recording brain anatomical targets, such as brain regions and cortical layers, by inter-referring MRI and immunostaining recordings. The interaction networks enabled us to quantify topological influence of individual neurons, in terms of controlling ability to other neurons. Especially, the result indicated that highly influential inhibitory neurons show higher controlling ability of other neurons than excitatory neurons, and are relatively often distributed in deeper layers of the cortex. Furthermore, the neurons having high controlling ability are more effectively limited in number than central nodes of k-cores, and these neurons also participate in more clustered motifs. In summary, this study suggested that the high controlling ability of inhibitory neurons is a key mechanism to keep balance with a large number of other excitatory neurons beyond simple higher firing rate. Application of the selection method of limited important neurons would be also applicable for the ability to effectively and selectively stimulate E/I imbalanced disease states.

Page Top ▲